1. Participants in Transcription–Replication Conflict and Their Role in Formation and Resolution of R-Loops. Davletgildeeva A.T., Kuznetsov N.A. International Journal of Molecular Sciences. 2025. V.26. N14. 6951. DOI: 10.3390/ijms26146951
2. Synthesis and Physicochemical Properties of New Phosphoramide Oligodeoxyribonucleotides. I. N-Caffeine Derivatives. Novgorodceva A.I., Vorob’ev, A.Y., Lomzov A.A., Vasilyeva S.V. Bioorg. Chem. 2025. V. 157. P. 108313. DOI: 10.1016/j.bioorg.2025.108313
3. Coordination between human DNA polymerase b and apurinic/ apyrimidinic endonuclease 1 in the course of DNA repair. Bakman A.S., Boichenko S.S., Kuznetsova A.A., Ishchenko A.A., Saparbaev M.K., Kuznetsov N.A. Biochimie. 2024. V. 216. P. 126-136. DOI: 10.1016/j.biochi.2023.10.007
4. Substrate Specificity Diversity of Human Terminal Deoxynucleotidyltransferase May Be a Naturally Programmed Feature Facilitating Its Biological Function. Kuznetsova A.A., Senchurova S.I., Gavrilova A.A., Tyugashev T.E., Mikushina E.S., Kuznetsov N.A. Int. J. Mol. Sci. 2024. V. 25. N 2. P. 879. DOI: 10.3390/ijms25020879
5. Kinetic Features of Degradation of R-Loops by RNase H1 from Escherichia coli. Kuznetsova A.A., Kosarev Y.A., Timofeyeva N.A., Novopashina D.S., Kuznetsov N.A. Int. J. Mol. Sci. 2024. V. 25. N 22. P. 12263. DOI: 10.3390/ijms252212263
6. Properties of phosphoramide benzoazole oligonucleotides (PABAOs). I. Structure and hybridization efficiency of N-benzimidazole derivatives. Golyshev V.M., Yushin I.I., Gulyaeva O.A., Baranovskaya E.E., Lomzov A.A. Biochem. and Biophys.Res. Com. 2024. V. 693. P. 149390. DOI: 10.1016/j.bbrc.2023.149390
7. Phosphoramidate Azole Oligonucleotides for Single Nucleotide Polymorphism Detection by PCR. Chubarov A.S., Baranovskaya E.E., Oscorbin I.P., Yushin I.I., Filipenko M.L., Pyshnyi D.V., Vasilyeva S.V., Lomzov A.A. Int. J. Mol. Sci. 2024. V. 25. N 1. P. 617. DOI: 10.3390/ijms25010617
8. The Impact of SNP-Induced Amino Acid Substitutions L19P and G66R in the dRP-Lyase Domain of Human DNA Polymerase β on Enzyme Activities. Kladova O.A., Tyugashev T.E., Yakimov D.V., Mikushina E.S., Novopashina D.S., Kuznetsov N.A., Kuznetsova A.A. Int. J. Mol. Sci. 2024. V. 25. N 8. P. 4182. DOI: 10.3390/ijms25084182
9. SNP-Associated Substitutions of Amino Acid Residues in the dNTP Selection Subdomain Decrease Polβ Polymerase Activity. Kladova O.A., Tyugashev T.E., Miroshnikov A.A., Novopashina D.S., Kuznetsov N.A., Kuznetsova A.A. Biomolecules. 2024. V. 14. N 5. P. 547.
10. Computational Modeling Study of the Molecular Basis of dNTP Selectivity in Human Terminal Deoxynucleotidyltransferase. Ukladov E.O., Tyugashev T.E., Kuznetsov N.A. Biomolecules. 2024. V. 14. N. 8. P. 961. DOI: 10.3390/biom14080961
11. Bioremediation of Polycyclic Aromatic Hydrocarbons by Means of Bacteria and Bacterial Enzymes. Davletgildeeva A.T., Kuznetsov N.A. Microorganisms. 2024. V. 12. N 9. P. 1814. DOI: 10.3390/microorganisms12091814
12. Synthesis and Properties of α-Phosphate-Modified Nucleoside Triphosphates. Novgorodceva A.I., Lomzov A.A., Vasilyeva S.V. Molecules. 2024. V. 29. N 17. P. 4121. DOI: 10.3390/molecules29174121
13. An Insight into the Mechanism of DNA Cleavage by DNA Endonuclease from the Hyperthermophilic Archaeon Pyrococcus furiosus. Davletgildeeva A.T., Kuznetsova A.A., Laval J., Saparbaev M.K., Kuznetsov N.A. Int. J. Mol. Sci. 2024. V. 25. N. 16. P. 8897. DOI: 10.3390/ijms25168897
14. The Role of DNMT Methyltransferases and TET Dioxygenases in the Maintenance of the DNA Methylation Level. Davletgildeeva A.T., Kuznetsov N.A. Biomolecules. 2024. V. 14. N 9. P. 1117. DOI: 10.3390/biom14091117
15. Dealkylation of Macromolecules by Eukaryotic α-Ketoglutarate-Dependent Dioxygenases from the AlkB-like Family. Davletgildeeva A.T., Kuznetsov N.A. Curr. Issues Mol. Biol. 2024. V. 46. N 9. P. 10462-10491. DOI: 10.3390/cimb46090622
16. Role of R-Loop Structure in Efficacy of RNA Elongation Synthesis by RNA Polymerase from Escherichia coli. Timofeyeva N.A., Tsoi E.I., Novopashina D.S., Kuznetsova A.A., Kuznetsov N.A. Int. J. Mol. Sci. 2024. V. 25. N 22. P. 12190. DOI: 10.3390/ijms252212190
17. The Trajectory of Damaged-Base Eversion into the Active Site of Apurinic/Apyrimidinic Endonuclease APE1 Regulates This Enzyme’s Substrate Specificity. Bulygin A.A., Kuznetsov N.A. Int. J. Mol. Sci. 2024. V. 25. N 22. P. 12287. DOI: 10.3390/ijms252212287
18. Characterization and PCR Application of Family B DNA Polymerases from Thermococcus stetteri. Kuznetsova A.A., Soloveva M.A., Mikushina E.S., Gavrilova A.A., Bakman A.S., Kuznetsov N.A. Life-Basel. 2024. V. 14. N 12. P. 1544. DOI: 10.3390/life14121544
19. Optimization of Automatic Synthesis of Benzoxazole Phosphoramidate Oligonucleotides. Baranovskaya E.E., Poddubnyakova S.A., Lomzov A.A., Vasilyeva S.V. Journal of Siberian Federal University. Mathematics & Physics. 2024. V. 17. N 6. P. 776–782.
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22. Fluorescently labeled human apurinic/apyrimidinic endonuclease APE1 reveals effects of DNA polymerase β on the APE1–DNA interaction. Bakman A.S., Kuznetsova A.A., Yanshole L.V., Ishchenko A.A., Saparbaev M.K., Fedorova O.S., Kuznetsov N.A. DNA Repair. 2023. V. 123. P. 103450. DOI: 10.1016/j.dnarep.2023.103450
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24. Synthesis of Oligonucleotides Carrying Inter-nucleotide N‑(Benzoazole)-phosphoramide Moieties. Vasilyeva S.V., Baranovskaya E.E., Dyudeeva E., Lomzov A.A., Pyshnyi D.V. ACS Omega. 2023. V. 8. N 1. P. 1556−1566. DOI: 10.1021/acsomega.2c07083
25. Human Polβ Natural Polymorphic Variants G118V and R149I Affects Substate Binding and Catalysis. Kladova O.A., Tyugashev T.E., Mikushina E.S., Soloviev N.O., Kuznetsov N.A., Novopashina D.S., Kuznetsova A.A. Int. J. Mol. Sci. 2023. V. 24. N 6. P. 5892. DOI: 10.3390/ijms24065892
26. The Activity of Natural Polymorphic Variants of Human DNA Polymerase β Having an Amino Acid Substitution in the Transferase Domain. Kladova O.A., Tyugashev T.E., Mikushina E.S., Kuznetsov N.A., Novopashina D.S., Kuznetsova A.A. Cells. 2023. V. 12. N 9. P. 1300. DOI: 10.3390/cells12091300
27. The Impact of Human DNA Glycosylases on the Activity of DNA Polymerase β toward Various Base Excision Repair Intermediates. Bakman A.S., Boichenko S.V., Kuznetsova A.A., Ishchenko A.A., Saparbaev M.K., Kuznetsov N.A. Int. J. Mol. Sci. 2023. V. 24. N 11. P. 9594. DOI: 10.3390/ijms24119594
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29. Historical Aspects of Restriction Endonucleases as Intelligent Scissors for Genetic Engineering. Alekseeva I.V., Kuznetsov N.A. Fermentation. 2023. V. 9. N 10. P. 874. DOI: 10.3390/fermentation9100874
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